Detailed information of SNP:
|
SNP ID:
sf0528352382(Gbrowse)
Chromosome: chr05 Position: 28352382 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 96.30% | 3.70% |
| All Indica | 795 | 94.84% | 5.16% |
| All Japonica | 488 | 97.95% | 2.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 326 | 99.69% | 0.31% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528352382 | C->T | LOC_Os05g49540(LOC_Os05g49540.1) | INTRON |