Detailed information of SNP:



SNP ID: sf0528352382(Gbrowse)

Chromosome: chr05

Position: 28352382
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1405 96.30% 3.70%
All Indica795 94.84% 5.16%
All Japonica488 97.95% 2.05%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II210 89.52% 10.48%
Indica Intermediate210 92.38% 7.62%
Temperate Japonica326 99.69% 0.31%
Tropical Japonica94 93.62% 6.38%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0528352382 C->T LOC_Os05g49540(LOC_Os05g49540.1) INTRON