Detailed information of SNP:
|
SNP ID:
sf0528422316(Gbrowse)
Chromosome: chr05 Position: 28422316 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 91.39% | 8.61% |
| All Indica | 753 | 92.83% | 7.17% |
| All Japonica | 494 | 87.45% | 12.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 94.77% | 5.23% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 200 | 92.00% | 8.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 36.96% | 63.04% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528422316 | C->T | INTERGENIC | None |