Detailed information of SNP:
|
SNP ID:
sf0528438705(Gbrowse)
Chromosome: chr05 Position: 28438705 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.59% | 18.41% |
| All Indica | 799 | 77.60% | 22.40% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 44.60% | 55.40% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528438705 | G->A | INTERGENIC | None |