Detailed information of SNP:
|
SNP ID:
sf0528445922(Gbrowse)
Chromosome: chr05 Position: 28445922 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 50.99% | 49.01% |
| All Indica | 795 | 75.47% | 24.53% |
| All Japonica | 497 | 18.91% | 81.09% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 212 | 40.57% | 59.43% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528445922 | C->T | LOC_Os05g49710(LOC_Os05g49710.1) | SNPs that introduce stop codons |