Detailed information of SNP:
|
SNP ID:
sf0528470083(Gbrowse)
Chromosome: chr05 Position: 28470083 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 58.22% | 41.78% |
| All Indica | 792 | 30.05% | 69.95% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 5.63% | 94.37% |
| Indica II | 211 | 71.09% | 28.91% |
| Indica Intermediate | 208 | 32.21% | 67.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528470083 | C->T | INTERGENIC | None |