Detailed information of SNP:
|
SNP ID:
sf0528497969(Gbrowse)
Chromosome: chr05 Position: 28497969 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1284 | 92.29% | 7.71% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 370 | 75.41% | 24.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 234 | 66.24% | 33.76% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 51 | 78.43% | 21.57% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528497969 | C->T | INTERGENIC | None |