Detailed information of SNP:
|
SNP ID:
sf0528513007(Gbrowse)
Chromosome: chr05 Position: 28513007 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 94.13% | 5.87% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 461 | 83.73% | 16.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 309 | 95.15% | 4.85% |
| Tropical Japonica | 90 | 63.33% | 36.67% |
| Japonica Intermediate | 62 | 56.45% | 43.55% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528513007 | G->A | INTERGENIC | None |