Detailed information of SNP:
|
SNP ID:
sf0528559833(Gbrowse)
Chromosome: chr05 Position: 28559833 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 67.23% | 32.77% |
| All Indica | 799 | 44.68% | 55.32% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 19.47% | 80.53% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528559833 | A->C | LOC_Os05g49890(LOC_Os05g49890.2) | UTR_3_PRIME |
| sf0528559833 | A->C | LOC_Os05g49890(LOC_Os05g49890.1) | UTR_3_PRIME |
| sf0528559833 | A->C | LOC_Os05g49890(LOC_Os05g49890.3) | UTR_3_PRIME |