Detailed information of SNP:
|
SNP ID:
sf0528588230(Gbrowse)
Chromosome: chr05 Position: 28588230 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 93.98% | 6.02% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 423 | 81.80% | 18.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 282 | 95.39% | 4.61% |
| Tropical Japonica | 82 | 56.10% | 43.90% |
| Japonica Intermediate | 59 | 52.54% | 47.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528588230 | G->A | INTERGENIC | None |