Detailed information of SNP:
|
SNP ID:
sf0528591039(Gbrowse)
Chromosome: chr05 Position: 28591039 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 89.86% | 10.14% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 479 | 72.23% | 27.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 63.75% | 36.25% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 75.76% | 24.24% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528591039 | C->T | INTERGENIC | None |