Detailed information of SNP:
|
SNP ID:
sf0528607899(Gbrowse)
Chromosome: chr05 Position: 28607899 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 68.49% | 31.51% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 469 | 10.66% | 89.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 316 | 0.95% | 99.05% |
| Tropical Japonica | 89 | 50.56% | 49.44% |
| Japonica Intermediate | 64 | 3.12% | 96.88% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528607899 | T->C | INTERGENIC | None |