Detailed information of SNP:
|
SNP ID:
sf0528644218(Gbrowse)
Chromosome: chr05 Position: 28644218 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 95.03% | 4.97% |
| All Indica | 770 | 91.69% | 8.31% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 98.62% | 1.38% |
| Indica II | 204 | 81.86% | 18.14% |
| Indica Intermediate | 204 | 89.22% | 10.78% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528644218 | C->T | LOC_Os05g50090(LOC_Os05g50090.1) | INTRON |