Detailed information of SNP:
|
SNP ID:
sf0528644434(Gbrowse)
Chromosome: chr05 Position: 28644434 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 95.04% | 4.96% |
| All Indica | 772 | 91.58% | 8.42% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 98.34% | 1.66% |
| Indica II | 206 | 82.52% | 17.48% |
| Indica Intermediate | 204 | 88.73% | 11.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528644434 | G->T | LOC_Os05g50090(LOC_Os05g50090.1) | INTRON |