Detailed information of SNP:
|
SNP ID:
sf0528644537(Gbrowse)
Chromosome: chr05 Position: 28644537 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 79.16% | 20.84% |
| All Indica | 781 | 63.51% | 36.49% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 43.80% | 56.20% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 207 | 77.78% | 22.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528644537 | G->A | LOC_Os05g50090(LOC_Os05g50090.1) | INTRON |