Detailed information of SNP:
|
SNP ID:
sf0528644826(Gbrowse)
Chromosome: chr05 Position: 28644826 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 94.60% | 5.40% |
| All Indica | 772 | 91.06% | 8.94% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 98.34% | 1.66% |
| Indica II | 205 | 81.46% | 18.54% |
| Indica Intermediate | 205 | 87.80% | 12.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528644826 | G->A | LOC_Os05g50090(LOC_Os05g50090.1) | INTRON |