Detailed information of SNP:
|
SNP ID:
sf0528645094(Gbrowse)
Chromosome: chr05 Position: 28645094 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 80.20% | 19.80% |
| All Indica | 789 | 65.53% | 34.47% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 46.22% | 53.78% |
| Indica II | 211 | 85.31% | 14.69% |
| Indica Intermediate | 208 | 79.81% | 20.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528645094 | C->T | LOC_Os05g50090(LOC_Os05g50090.1) | INTRON |