Detailed information of SNP:
|
SNP ID:
sf0528645104(Gbrowse)
Chromosome: chr05 Position: 28645104 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1369 | 94.81% | 5.19% |
| All Indica | 751 | 91.34% | 8.66% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 346 | 98.55% | 1.45% |
| Indica II | 202 | 82.67% | 17.33% |
| Indica Intermediate | 203 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528645104 | A->G | LOC_Os05g50090(LOC_Os05g50090.1) | INTRON |