Detailed information of SNP:
|
SNP ID:
sf0528674060(Gbrowse)
Chromosome: chr05 Position: 28674060 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1322 | 95.46% | 4.54% |
| All Indica | 707 | 92.08% | 7.92% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 96.94% | 3.06% |
| Indica II | 172 | 86.05% | 13.95% |
| Indica Intermediate | 176 | 88.07% | 11.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528674060 | T->G | LOC_Os05g50140(LOC_Os05g50140.1) | INTRON |
| sf0528674060 | T->G | LOC_Os05g50140(LOC_Os05g50140.2) | INTRON |