Detailed information of SNP:
SNP ID:
sf0528753043(Gbrowse)
Chromosome: chr05 Position: 28753043 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1418 | 65.94% | 34.06% |
All Indica | 799 | 99.12% | 0.88% |
All Japonica | 496 | 9.48% | 90.52% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 97.65% | 2.35% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 0.00% | 100.00% |
Tropical Japonica | 93 | 49.46% | 50.54% |
Japonica Intermediate | 68 | 1.47% | 98.53% |
Group VI/Aromatic | 14 | 14.29% | 85.71% |
Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0528753043 | C->T | INTERGENIC | None |