Detailed information of SNP:
|
SNP ID:
sf0528769784(Gbrowse)
Chromosome: chr05 Position: 28769784 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 69.16% | 30.84% |
| All Indica | 781 | 53.78% | 46.22% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 364 | 73.08% | 26.92% |
| Indica II | 211 | 39.81% | 60.19% |
| Indica Intermediate | 206 | 33.98% | 66.02% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528769784 | G->A | INTERGENIC | None |