Detailed information of SNP:
|
SNP ID:
sf0528773410(Gbrowse)
Chromosome: chr05 Position: 28773410 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1244 | 72.11% | 27.89% |
| All Indica | 791 | 95.58% | 4.42% |
| All Japonica | 344 | 12.79% | 87.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 207 | 86.47% | 13.53% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 238 | 4.20% | 95.80% |
| Tropical Japonica | 68 | 35.29% | 64.71% |
| Japonica Intermediate | 38 | 26.32% | 73.68% |
| Group VI/Aromatic | 9 | 66.67% | 33.33% |
| Intermediate | 33 | 72.73% | 27.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528773410 | A->G | LOC_Os05g50310(LOC_Os05g50310.1) | Non-Synonymous SNP |