Detailed information of SNP:
|
SNP ID:
sf0528773592(Gbrowse)
Chromosome: chr05 Position: 28773592 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 97.38% | 2.62% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 488 | 92.62% | 7.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 88 | 75.00% | 25.00% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528773592 | C->G | LOC_Os05g50310(LOC_Os05g50310.1) | Non-Synonymous SNP |