Detailed information of SNP:
|
SNP ID:
sf0528787263(Gbrowse)
Chromosome: chr05 Position: 28787263 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1329 | 86.91% | 13.09% |
| All Indica | 709 | 76.73% | 23.27% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 304 | 61.18% | 38.82% |
| Indica II | 208 | 87.02% | 12.98% |
| Indica Intermediate | 197 | 89.85% | 10.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528787263 | G->A | LOC_Os05g50350(LOC_Os05g50350.1) | INTRON |