Detailed information of SNP:
|
SNP ID:
sf0528791954(Gbrowse)
Chromosome: chr05 Position: 28791954 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 74.75% | 25.25% |
| All Indica | 790 | 56.08% | 43.92% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 77.51% | 22.49% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 208 | 34.13% | 65.87% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528791954 | T->A | INTERGENIC | None |