Detailed information of SNP:
|
SNP ID:
sf0528905622(Gbrowse)
Chromosome: chr05 Position: 28905622 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 71.01% | 28.99% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 491 | 23.01% | 76.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 5.42% | 94.58% |
| Tropical Japonica | 92 | 79.35% | 20.65% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528905622 | T->C | INTERGENIC | None |