Detailed information of SNP:
|
SNP ID:
sf0528993709(Gbrowse)
Chromosome: chr05 Position: 28993709 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.25% | 35.75% |
| All Indica | 799 | 52.19% | 47.81% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 375 | 72.53% | 27.47% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 87.16% | 12.84% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0528993709 | A->G | INTERGENIC | None |