Detailed information of SNP:
|
SNP ID:
sf0529014497(Gbrowse)
Chromosome: chr05 Position: 29014497 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 77.49% | 22.51% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 496 | 41.13% | 58.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 21.86% | 78.14% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529014497 | G->A | LOC_Os05g50730(LOC_Os05g50730.1) | UTR_3_PRIME |