Detailed information of SNP:
|
SNP ID:
sf0529061152(Gbrowse)
Chromosome: chr05 Position: 29061152 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 91.28% | 8.72% |
| All Indica | 792 | 93.43% | 6.57% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529061152 | G->T | INTERGENIC | None |