Detailed information of SNP:
|
SNP ID:
sf0529165013(Gbrowse)
Chromosome: chr05 Position: 29165013 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.10% | 43.90% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 83.41% | 16.59% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529165013 | G->A | INTERGENIC | None |