Detailed information of SNP:
|
SNP ID:
sf0529209523(Gbrowse)
Chromosome: chr05 Position: 29209523 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.21% | 4.79% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529209523 | C->T | LOC_Os05g51000(LOC_Os05g51000.1) | Synonymous |
| sf0529209523 | C->T | LOC_Os05g51000(LOC_Os05g51000.2) | Synonymous |
| sf0529209523 | C->T | LOC_Os05g51000(LOC_Os05g51000.3) | Synonymous |
| sf0529209523 | C->T | LOC_Os05g51000(LOC_Os05g51000.4) | Synonymous |