Detailed information of SNP:
|
SNP ID:
sf0529304497(Gbrowse)
Chromosome: chr05 Position: 29304497 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 61.61% | 38.39% |
| All Indica | 793 | 95.59% | 4.41% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529304497 | A->G | INTERGENIC | None |