Detailed information of SNP:
|
SNP ID:
sf0529308409(Gbrowse)
Chromosome: chr05 Position: 29308409 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 51.52% | 48.48% |
| All Indica | 795 | 79.12% | 20.88% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 77.75% | 22.25% |
| Indica II | 211 | 81.04% | 18.96% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529308409 | A->G | LOC_Os05g51200(LOC_Os05g51200.1) | Synonymous |