Detailed information of SNP:
|
SNP ID:
sf0529309204(Gbrowse)
Chromosome: chr05 Position: 29309204 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 57.60% | 42.40% |
| All Indica | 782 | 89.77% | 10.23% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 92.01% | 7.99% |
| Indica II | 211 | 84.83% | 15.17% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529309204 | A->G | INTERGENIC | None |