Detailed information of SNP:
|
SNP ID:
sf0529354576(Gbrowse)
Chromosome: chr05 Position: 29354576 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 95.54% | 4.46% |
| All Indica | 769 | 92.07% | 7.93% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 97.84% | 2.16% |
| Indica II | 202 | 90.59% | 9.41% |
| Indica Intermediate | 197 | 82.74% | 17.26% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529354576 | C->G | LOC_Os05g51280(LOC_Os05g51280.1) | Non-Synonymous SNP |