Detailed information of SNP:
|
SNP ID:
sf0529371060(Gbrowse)
Chromosome: chr05 Position: 29371060 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 88.69% | 11.31% |
| All Indica | 789 | 82.38% | 17.62% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 371 | 81.40% | 18.60% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 207 | 77.29% | 22.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529371060 | T->C | LOC_Os05g51310(LOC_Os05g51310.1) | INTRON |