Detailed information of SNP:
|
SNP ID:
sf0529380269(Gbrowse)
Chromosome: chr05 Position: 29380269 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 93.33% | 6.67% |
| All Indica | 790 | 88.99% | 11.01% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 205 | 77.07% | 22.93% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529380269 | C->T | LOC_Os05g51330(LOC_Os05g51330.1) | Non-Synonymous SNP |