Detailed information of SNP:
|
SNP ID:
sf0529472852(Gbrowse)
Chromosome: chr05 Position: 29472852 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 62.23% | 37.77% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 492 | 4.67% | 95.33% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 91 | 12.09% | 87.91% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529472852 | G->A | INTERGENIC | None |