Detailed information of SNP:
|
SNP ID:
sf0529544449(Gbrowse)
Chromosome: chr05 Position: 29544449 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 85.19% | 14.81% |
| All Indica | 799 | 77.35% | 22.65% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529544449 | A->G | INTERGENIC | None |