Detailed information of SNP:
|
SNP ID:
sf0529640583(Gbrowse)
Chromosome: chr05 Position: 29640583 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 95.85% | 4.15% |
| All Indica | 788 | 96.57% | 3.43% |
| All Japonica | 488 | 93.85% | 6.15% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 93.46% | 6.54% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 330 | 94.24% | 5.76% |
| Tropical Japonica | 90 | 91.11% | 8.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529640583 | C->A | INTERGENIC | None |