Detailed information of SNP:
|
SNP ID:
sf0529772803(Gbrowse)
Chromosome: chr05 Position: 29772803 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1284 | 94.55% | 5.45% |
| All Indica | 699 | 90.99% | 9.01% |
| All Japonica | 471 | 98.73% | 1.27% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 334 | 88.92% | 11.08% |
| Indica II | 182 | 92.86% | 7.14% |
| Indica Intermediate | 183 | 92.90% | 7.10% |
| Temperate Japonica | 321 | 98.75% | 1.25% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 59 | 98.31% | 1.69% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529772803 | C->A | INTERGENIC | None |