Detailed information of SNP:
|
SNP ID:
sf0529851141(Gbrowse)
Chromosome: chr05 Position: 29851141 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 80.04% | 19.96% |
| All Indica | 784 | 66.96% | 33.04% |
| All Japonica | 493 | 97.97% | 2.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 77.03% | 22.97% |
| Indica II | 210 | 49.52% | 50.48% |
| Indica Intermediate | 204 | 66.67% | 33.33% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0529851141 | A->G | INTERGENIC | None |