Detailed information of SNP:
|
SNP ID:
sf0600001758(Gbrowse)
Chromosome: chr06 Position: 1758 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1343 | 92.93% | 7.07% |
| All Indica | 728 | 88.87% | 11.13% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 337 | 85.16% | 14.84% |
| Indica II | 198 | 95.45% | 4.55% |
| Indica Intermediate | 193 | 88.60% | 11.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600001758 | A->G | LOC_Os06g01010(LOC_Os06g01010.1) | INTRON |