Detailed information of SNP:
|
SNP ID:
sf0600057626(Gbrowse)
Chromosome: chr06 Position: 57626 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1317 | 58.31% | 41.69% |
| All Indica | 719 | 27.82% | 72.18% |
| All Japonica | 492 | 98.37% | 1.63% |
| Aus | 53 | 77.36% | 22.64% |
| Indica I | 336 | 24.70% | 75.30% |
| Indica II | 199 | 41.71% | 58.29% |
| Indica Intermediate | 184 | 18.48% | 81.52% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600057626 | G->C | INTERGENIC | None |