Detailed information of SNP:
|
SNP ID:
sf0600091313(Gbrowse)
Chromosome: chr06 Position: 91313 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1204 | 80.07% | 19.93% |
| All Indica | 612 | 65.52% | 34.48% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 48 | 60.42% | 39.58% |
| Indica I | 292 | 64.04% | 35.96% |
| Indica II | 165 | 73.94% | 26.06% |
| Indica Intermediate | 155 | 59.35% | 40.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600091313 | C->T | INTERGENIC | None |