Detailed information of SNP:
|
SNP ID:
sf0600113214(Gbrowse)
Chromosome: chr06 Position: 113214 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 97.43% | 2.57% |
| All Indica | 782 | 96.93% | 3.07% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 366 | 95.90% | 4.10% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 206 | 97.09% | 2.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600113214 | C->T | INTERGENIC | None |