Detailed information of SNP:
|
SNP ID:
sf0600115582(Gbrowse)
Chromosome: chr06 Position: 115582 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 58.35% | 41.65% |
| All Indica | 725 | 93.93% | 6.07% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 60 | 96.67% | 3.33% |
| Indica I | 350 | 97.71% | 2.29% |
| Indica II | 182 | 82.42% | 17.58% |
| Indica Intermediate | 193 | 97.93% | 2.07% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600115582 | T->G | INTERGENIC | None |