Detailed information of SNP:
|
SNP ID:
sf0600129622(Gbrowse)
Chromosome: chr06 Position: 129622 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1305 | 54.33% | 45.67% |
| All Indica | 694 | 88.76% | 11.24% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 357 | 99.72% | 0.28% |
| Indica II | 175 | 63.43% | 36.57% |
| Indica Intermediate | 162 | 91.98% | 8.02% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600129622 | C->T | LOC_Os06g01160(LOC_Os06g01160.1) | Non-Synonymous SNP |