Detailed information of SNP:



SNP ID: sf0600139599(Gbrowse)

Chromosome: chr06

Position: 139599
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 96.40% 3.60%
All Indica797 94.10% 5.90%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II212 80.19% 19.81%
Indica Intermediate210 97.62% 2.38%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0600139599 C->T INTERGENIC None