Detailed information of SNP:
|
SNP ID:
sf0600155777(Gbrowse)
Chromosome: chr06 Position: 155777 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 89.78% | 10.22% |
| All Indica | 725 | 82.07% | 17.93% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 325 | 80.31% | 19.69% |
| Indica II | 202 | 89.11% | 10.89% |
| Indica Intermediate | 198 | 77.78% | 22.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600155777 | C->T | INTERGENIC | None |