Detailed information of SNP:
|
SNP ID:
sf0600208076(Gbrowse)
Chromosome: chr06 Position: 208076 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.57% | 44.43% |
| All Indica | 799 | 28.91% | 71.09% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 375 | 8.27% | 91.73% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600208076 | G->C | INTERGENIC | None |